Gribskov Lab

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    Version from 14:59, 5 Apr 2016

    This revision modified by sufang_wang (Ban)

     


    {{page.toc}}

    Announcements

    Location

    We are located on the third floor of the Hockmeyer Hall of Structural Biology at Purdue University (HOCK on the campus map).  We also have a lab facebook page

    People

    {{wiki.Page("Gribskov_Lab/People")}}

    Group Meetings

    Everyone - 12:00pm-1:30pm Monday, HOCK 330

    Speaker Date Topic
    Gribskov 1 Feb  
    J Wang 8 Feb RNA 2nd Structure Prediction by Sequence Segmentation and MapReduce [paper]
    Liu 15 Feb  
      22 Feb Cancelled due to unforeseen circumstances
    Jiang 29 Feb Graph clustering
    Sun 7 Mar Gene expression inference with deep learning [paper]
    Padmanabhan 14 Mar  
    Yang 21 Mar  
      28 Mar canceled
    Huang 4 Apr  
      11 Apr canceled
    S Wang 18 Apr   
    Huang 25 Apr defense rehearsal
      2 May  
      9 May  
      16 May  
      23 May  
      30 May  
      6 Jun  
      13 Jun  
      20 Jun  
      27 Jun  

    Normal rotation: Gribskov, J Wang, Liu, Sun, Jiang, Padmanabhan, Yang, Huang, S Wang

    Conferences

    Please add conferences that you think are relevant.  

    General links


    Gold Shading indicates "Needs Update"  please help!

    Light Blue Shading indicates "Past Due".

    AICoB

    INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY

    • Deadline: Feb 2, 2016
    • Trujillo, Spain
    • June 21-23, 2016

    BIBM

    IEEE International Conference on Bioinformatics and Biomedicine 

    • DEC 15 - 18, 2016
    • Shenzhen China.
    • Electronic submission of full papers: Aug. 14 , 2016

      Notification of paper acceptance: October 15, 2016

      Camera-ready of accepted papers: Nov 5, 2016 

    BICob

    International Conference on Bioinformatics and Computational Biology

    • April 4-6
    • Las Vegas, NV, USA
    • Paper Submission Deadline: October 30, 2015.
    • Notification of Acceptance: December 18, 2015.
    • Pre-registration and Camera-ready paper: January 20, 2016.

    APBC

    The 15th Asia Pacific Bioinformatics Conference

    • 16 - 18 Jan, 2017
    • Shenzhen, China
    • Submission Deadline: July 30, 2016
    • Author Notification: August 30, 2016
    • Final Version Due: October 1, 2016

    RECOMB

    International Conference on Research in Computational Molecular Biology

    • Apr 17 - 21, 2016
    • UCLA, Los Angeles, CA
    • Paper Submission Deadline: Oct 26, 2015
    • Paper Acceptance Decision: Dec 15, 2015
    • Final version of papers due: Jan 15, 2016
    • Travel fellowship application deadline: Feb 15, 2016
    • Early registration deadline: Mar 1, 2016

    ISBRA

    INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS RESEARCH AND APPLICATIONS

    • June 5-8, 2016
    • Minsk, Belarus
    • Submission deadline- February 15, 2016
    • Notification of acceptance- March 15, 2016
    • Final version due- March 31, 2016

    GLBIO

    Great Lakes Bioinformatics Conference 2016 and Canadian Computational Biology Conference

    • 16 - 19 May, 2016
    • University of Toronto
    • Deadline: Feb 1, 2016 for full-length paper submission

    iCBBE

    International Conference on Bioinformatics and Biomedical Engineering

    • Sept 20 - 22, 2016
    • Xi'an, China
    • Paper submission: March 16, 2016

    ISMB

    24th International Conference on Intelligent Systems for Molecular Biology

    • Orlando, Florida
    • 8 - 12 July, 2016
    • Proceeding paper submission deadline: Jan 15, 2016
    • Acceptance notification: Feb 19, 2016

    ACM-BCB

    ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics

    • Conference Date: OCT 2 - 5, 2016
    • Seattle, WA
    • Paper submission deadline: May 20, 2016
    • Notification sent to authors: July 15, 2016

    IEEE-ISB

    The 10th IEEE International Conference on Systems Biology (ISB 2016)

    • Conference Date: Aug 19-22, 2016
    • Weihai, Shandong, China
    • Paper submission deadline: June 30, 2016
    • Paper acceptance notification: July 10, 2016

    ICSB

    16th International Conference on Systems Biology (ICSB-2015)

    • Nov 23-26, 2015
    • Biopolis, Singapore.
    • Abstract submission deadline: 1st Round by Aug 1st and 2nd Round by Sept 15, 2015.

    Reading

    Projects and Information

    Requests

    • none right now

    Fun Stuff

    Mandelbrot

    As usual Wikipedia is a good start if you want to know more.  Sadly, Benoit Mandelbrot died 14 October 2010, at age 85.

    Eterna - RNA folding for the masses

    • teams seem to be active again gribskov 7 Mar 2013
    • learn about RNA folding and indulge your competitive feelings at the same time
    • our team name is XIOS

    NetLogo - Agent based programming

     

    Widespread RNA and DNA Sequence Differences in the Human Transcriptome pdf

    Social Events

    None currently scheduled.  Why not?

     


     


    Version as of 00:54, 12 Apr 2016

    This revision modified by bjiang (Ban)

     


    {{page.toc}}

    Announcements

    Location

    We are located on the third floor of the Hockmeyer Hall of Structural Biology at Purdue University (HOCK on the campus map).  We also have a lab facebook page

    People

    {{wiki.Page("Gribskov_Lab/People")}}

    Group Meetings

    Everyone - 12:00pm-1:30pm Monday, HOCK 330

    Speaker Date Topic
    Gribskov 1 Feb  
    J Wang 8 Feb RNA 2nd Structure Prediction by Sequence Segmentation and MapReduce [paper]
    Liu 15 Feb  
      22 Feb Cancelled due to unforeseen circumstances
    Jiang 29 Feb Graph clustering
    Sun 7 Mar Gene expression inference with deep learning [paper]
    Padmanabhan 14 Mar  
    Yang 21 Mar  
      28 Mar canceled
    Huang 4 Apr  
      11 Apr canceled
    S Wang 18 Apr   
    Huang 25 Apr defense rehearsal
      2 May  
      9 May  
      16 May  
      23 May  
      30 May  
      6 Jun  
      13 Jun  
      20 Jun  
      27 Jun  

    Normal rotation: Gribskov, J Wang, Liu, Sun, Jiang, Padmanabhan, Yang, Huang, S Wang

    Conferences

    Please add conferences that you think are relevant.  

    General links


    Gold Shading indicates "Needs Update"  please help!

    Light Blue Shading indicates "Past Due".

    AICoB

    INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY

    • Deadline: Feb 2, 2016
    • Trujillo, Spain
    • June 21-23, 2016

    BIBM

    IEEE International Conference on Bioinformatics and Biomedicine 

    • DEC 15 - 18, 2016
    • Shenzhen China.
    • Electronic submission of full papers: Aug. 14 , 2016
      Notification of paper acceptance: October 15, 2016
      Camera-ready of accepted papers: Nov 5, 2016 

    BICob

    International Conference on Bioinformatics and Computational Biology

    • April 4-6
    • Las Vegas, NV, USA
    • Paper Submission Deadline: October 30, 2015.
    • Notification of Acceptance: December 18, 2015.
    • Pre-registration and Camera-ready paper: January 20, 2016.

    APBC

    The 15th Asia Pacific Bioinformatics Conference

    • 16 - 18 Jan, 2017
    • Shenzhen, China
    • Submission Deadline: July 30, 2016
    • Author Notification: August 30, 2016
    • Final Version Due: October 1, 2016

    RECOMB

    International Conference on Research in Computational Molecular Biology

    • Apr 17 - 21, 2016
    • UCLA, Los Angeles, CA
    • Paper Submission Deadline: Oct 26, 2015
    • Paper Acceptance Decision: Dec 15, 2015
    • Final version of papers due: Jan 15, 2016
    • Travel fellowship application deadline: Feb 15, 2016
    • Early registration deadline: Mar 1, 2016

    ISBRA

    INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS RESEARCH AND APPLICATIONS

    • June 5-8, 2016
    • Minsk, Belarus
    • Submission deadline- February 15, 2016
    • Notification of acceptance- March 15, 2016
    • Final version due- March 31, 2016

    GLBIO

    Great Lakes Bioinformatics Conference 2016 and Canadian Computational Biology Conference

    • 16 - 19 May, 2016
    • University of Toronto
    • Deadline: Feb 1, 2016 for full-length paper submission

    iCBBE

    International Conference on Bioinformatics and Biomedical Engineering

    • Sept 20 - 22, 2016
    • Xi'an, China
    • Paper submission: March 16, 2016

    ISMB

    24th International Conference on Intelligent Systems for Molecular Biology

    • Orlando, Florida
    • 8 - 12 July, 2016
    • Proceeding paper submission deadline: Jan 15, 2016
    • Acceptance notification: Feb 19, 2016

    ACM-BCB

    ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics

    • Conference Date: OCT 2 - 5, 2016
    • Seattle, WA
    • Paper submission deadline: May 20, 2016
    • Notification sent to authors: July 15, 2016

    IEEE-ISB

    The 10th IEEE International Conference on Systems Biology (ISB 2016)

    • Conference Date: Aug 19-22, 2016
    • Weihai, Shandong, China
    • Paper submission deadline: June 30, 2016
    • Paper acceptance notification: July 10, 2016

    ICSB

    16th International Conference on Systems Biology (ICSB-2015)

    • Nov 23-26, 2015
    • Biopolis, Singapore.
    • Abstract submission deadline: 1st Round by Aug 1st and 2nd Round by Sept 15, 2015.

    Reading

    Projects and Information

    Requests

    • none right now

    Fun Stuff

    Mandelbrot

    As usual Wikipedia is a good start if you want to know more.  Sadly, Benoit Mandelbrot died 14 October 2010, at age 85.

    Eterna - RNA folding for the masses

    • teams seem to be active again gribskov 7 Mar 2013
    • learn about RNA folding and indulge your competitive feelings at the same time
    • our team name is XIOS

    NetLogo - Agent based programming

     

    Widespread RNA and DNA Sequence Differences in the Human Transcriptome pdf

    Social Events

    None currently scheduled.  Why not?