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Biological Sequence Analysis

    Summer Reading 2012

    Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids

    ISBN: 0521629713

    File is too big to post, but you can download, or see me gribskov

    Schedule: 2:00 pm Tuesdays

     
    Chapter Pages Topic Week Presenter Date
    1 1-10 Introduction 1 Gribskov 5 June
    2 12-45 Pairwise alignment, slides 1 & 2 Gribskov 12 June
    3 46-79 Markov chains and hidden Markov models 3 Wu 19 June
    4 80-98 Pairwise alignment using HMMs 4 Huang 26 June
    5 100-132 Profile HMMs for sequence families, slides 5 Yang 3 July
    6 134-159 Multiple sequence alignment methods 6 Jiang 10 July
    7 160-190 Building phylogenetic trees  7 Hengenius 24 July
    8 192-231 Probabilistic approaches to phylogeny 8 Padmanabhan 31 July
    9 233-259 Transformational grammars 9 Rahman 7 August
    10 260-297 RNA structure analysis  10 Liu 14 August
    11 299-323 Background on probability  11 Wang 21 August
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    1205.98 kB10:21, 12 Jun 2012gribskovActions
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    776.39 kB15:17, 6 Aug 2012yang365Actions
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