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Gribskov Lab

     


    Announcements

    Location

    We are located on the third floor of the Hockmeyer Hall of Structural Biology at Purdue University (HOCK on the campus map).  We also have a lab facebook page

    People

    Current Students

    Former Students

    • Qiong Wu - PhD, Office: Hock 334, X46207, email: wu41@purdue.edu, office: X48124
    • James Hengenius - PhD, Post-Doctoral Researcher at University of Pittsburgh.
    • Greg Ziegler - PhD, email: gziegler@purdue.edu, Office: X46207, Cell: 573 795 3678
    • Patrick Dolan - PhD, Post-Doctoral Researcher at Stanford University.
    • Reazur Rahman - PhD, Post-Doctoral Research Scientist at Brandeis University, Waltham MA.  
      email: reazur@gmail.com Cell: 609 240 9307
    • Minming Li - M.S. Cell: 765 418 0831
    • Prasad Siddavatam - PhD, Senior Research Scientist at Serologix LLC
      email: siddavatam@gmail.com, cell: 765-543-7584
    • Aditi Gupta - PhD,  Postdoctoral Scientist at Michigan State University, 
      email: agupta@msu.edu, but gmail preferred aditi9783@gmail.com
      1501 East Lansing Drive, Apt 1, East Lansing, MI 48823.
    • Kejie Li - PhD, Computational Biologist at Biogen Idec
       email: likejie@gmail.com, 87 New St., Unit 410, Cambridge MA, 02138, cell: 317-348-0768,
      MSN space: http://spaces.msn.com/likejie
    • Jin Tae Kwak - MS
    • Omer Ahmad - MS
    • Jennie Gu - PhD (UCSD)
    • Christina Zheng - PhD (UCSD)
    • Lynn Fink - PhD (UCSD)

    Group Meetings

    Everyone - 12:00pm-1:30pm Monday, HOCK 330

    Speaker Date Topic
    Huang 25 Apr defense rehearsal
      2 May cancelled
    Gribskov 9 May

    summer planning.  Shall we read a book?  Do a project?Add you suggestions
    Deep learning

      16 May cancelled
      23 May no meeting
      30 May Holiday
      6 Jun  
      13 Jun no meeting
      20 Jun no meeting
      27 Jun  
      4 July  
      11 July  
      18 July no meeting
      25 July  
      1 August  
      8 August probably no meeting
      15 August probably no meeting
      22 August  

    Normal rotation: Gribskov, J Wang, Liu, Sun, Yang, S Wang

    Conferences

    Please add conferences that you think are relevant.  

    General links


    Gold Shading indicates "Needs Update"  please help!

    AICoB

    INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY

    • Deadline: Feb 2, 2016
    • Trujillo, Spain
    • June 21-23, 2016

    BIBM

    IEEE International Conference on Bioinformatics and Biomedicine 

    • DEC 15 - 18, 2016
    • Shenzhen China.
    • Electronic submission of full papers: Aug. 14 , 2016
      Notification of paper acceptance: October 15, 2016
      Camera-ready of accepted papers: Nov 5, 2016 

    BICob

    International Conference on Bioinformatics and Computational Biology

    • April 4-6
    • Las Vegas, NV, USA
    • Paper Submission Deadline: October 30, 2015.
    • Notification of Acceptance: December 18, 2015.
    • Pre-registration and Camera-ready paper: January 20, 2016.

    APBC

    The 15th Asia Pacific Bioinformatics Conference

    • 16 - 18 Jan, 2017
    • Shenzhen, China
    • Submission Deadline: July 30, 2016
    • Author Notification: August 30, 2016
    • Final Version Due: October 1, 2016

    RECOMB

    International Conference on Research in Computational Molecular Biology

    • May 3-7, 2017
    • Hong Kong
    • Paper Submission Deadline: Oct 28, 2016

    ISBRA

    INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS RESEARCH AND APPLICATIONS

    • June 5-8, 2016
    • Minsk, Belarus
    • Submission deadline- February 15, 2016
    • Notification of acceptance- March 15, 2016
    • Final version due- March 31, 2016

    GLBIO

    Great Lakes Bioinformatics Conference 2017

    • May 15-17, 2017
    • University of Illinois at Chicago
    • Deadline: Jan 23, 2017 for full-length paper submission

    iCBBE

    International Conference on Bioinformatics and Biomedical Engineering

    • Sept 20 - 22, 2016
    • Xi'an, China
    • Paper submission: March 16, 2016

    ISMB

    24th International Conference on Intelligent Systems for Molecular Biology

    • Prague, Czech Republic
    • 21 - 25 July, 2017

    ACM-BCB

    ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics

    • Conference Date: OCT 2 - 5, 2016
    • Seattle, WA
    • Paper submission deadline: May 20, 2016
    • Notification sent to authors: July 15, 2016

    IEEE-ISB

    The 10th IEEE International Conference on Systems Biology (ISB 2016)

    • Conference Date: Aug 19-22, 2016
    • Weihai, Shandong, China
    • Paper submission deadline: June 30, 2016
    • Paper acceptance notification: July 10, 2016

    ICSB

    17th International Conference on Systems Biology (ICSB-2016)

    • Sept 16-20, 2016
    • Barcelona, Spain.
    • Abstract deadline: June 1, 2016.

    Reading

    Requests

    • none right now

    Fun Stuff

    Mandelbrot

    As usual Wikipedia is a good start if you want to know more.  Sadly, Benoit Mandelbrot died 14 October 2010, at age 85.

    Eterna - RNA folding for the masses

    • teams seem to be active again gribskov 7 Mar 2013
    • learn about RNA folding and indulge your competitive feelings at the same time
    • our team name is XIOS

    NetLogo - Agent based programming

     

    Widespread RNA and DNA Sequence Differences in the Human Transcriptome pdf

    Social Events

    None currently scheduled.  Why not?

     


     


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     2013-11-18_lab_meeting.pdf
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    874.57 kB16:40, 18 Nov 2013yang365Actions
     94krogh_ismb.pdf
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    131.04 kB12:41, 12 May 2011gribskovActions
     97krogh_ismb.pdf
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    137.45 kB12:41, 12 May 2011gribskovActions
     a folding algorithm for extended RNA ss.full.pdf
    a folding algorithm for extended RNA ss
    402.83 kB14:46, 22 Jul 2011wang905Actions
     class_hmm.pptx
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    1308.36 kB12:18, 22 Jun 2011gribskovActions
     gene prediction with crf 2005 A.culotta.pdf
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    118.19 kB18:06, 5 Mar 2012wang905Actions
     Genome Res.-2013-Will-gr.137091.111 -- Supplemental_Material.pdf
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    832.41 kB20:53, 12 Jun 2013huang147Actions
     Genome Res.-2013-Will-gr.137091.111.pdf
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     group_meeting.pdf
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    646.75 kB14:19, 23 Mar 2015yang365Actions
     introduction crf.pdf
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    404.85 kB18:06, 5 Mar 2012wang905Actions
     mapping_and_quantifying_mammalian_transcriptome.pdf
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    648.36 kB14:08, 22 Aug 2011rahmanrActions
     Modelling and analysis of gene regulatory networks.pdf
    Minming presn, Lab Meeting on July.6th,2011
    847.7 kB17:06, 26 Jun 2011MinmingActions
     RNA_seq perspective.pdf
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