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Genemark.hmm

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    Eukariotyc GeneMark.hmm version bp 3.8h August 16, 2007
    Sequence name: Fri Oct 10 10:04:12 EDT 2008
    Sequence length: 125001 bp
    G+C content: 47.32%
    Matrices file: /home/genmark/euk_ghm.matrices/rice_hmm3.0mod
    Fri Oct 10 10:04:15 2008
    
    
    Predicted genes/exons
    
    Gene Exon Strand Exon           Exon Range         Exon      Start/End
      #    #         Type                             Length       Frame
    
    
      1  20   -  Terminal           553        696        144          3 1 - -
      1  19   -  Internal          1060       1098         39          3 1 - -
      1  18   -  Internal          1285       1333         49          3 3 - -
      1  17   -  Internal          1670       1749         80          2 1 - -
      1  16   -  Internal          1875       1952         78          3 1 - -
      1  15   -  Internal          2053       2114         62          3 2 - -
      1  14   -  Internal          2306       2608        303          1 2 - -
      1  13   -  Internal          2733       2793         61          1 1 - -
      1  12   -  Internal          2888       2947         60          3 1 - -
      1  11   -  Internal          2998       3109        112          3 3 - -
      1  10   -  Internal          3171       3283        113          2 1 - -
      1   9   -  Internal          4060       4340        281          3 2 - -
      1   8   -  Internal          4418       4513         96          1 2 - -
      1   7   -  Internal          4565       4641         77          1 3 - -
      1   6   -  Internal          4703       4743         41          2 1 - -
      1   5   -  Internal          4851       4994        144          3 1 - -
      1   4   -  Internal          5049       5159        111          3 1 - -
      1   3   -  Internal          5517       5657        141          3 1 - -
      1   2   -  Internal          5708       5818        111          3 1 - -
      1   1   -  Initial           5892       6056        165          3 1 - -
    
      2   1   +  Initial           6585       6695        111          1 3 - -
      2   2   +  Internal          6829       6994        166          1 1 - -
      2   3   +  Internal          7240       7280         41          2 3 - -
      2   4   +  Internal          7371       7572        202          1 1 - -
      2   5   +  Internal          7617       7679         63          2 1 - -
      2   6   +  Internal          7745       7798         54          2 1 - -
      2   7   +  Terminal          7852       7955        104          2 3 - -
    
      3   1   +  Single            8000      10297       2298          1 3 - -
    
      4   4   -  Terminal         10479      10592        114          3 1 - -
      4   3   -  Internal         10707      10851        145          3 3 - -
      4   2   -  Internal         10914      10964         51          2 3 - -
      4   1   -  Initial          11061      11227        167          2 1 - -
    
      5   1   +  Initial          11415      11507         93          1 3 - -
      5   2   +  Internal         11532      11656        125          1 2 - -
      5   3   +  Internal         11868      11972        105          3 2 - -
      5   4   +  Internal         12291      12533        243          3 2 - -
      5   5   +  Internal         12589      12949        361          3 3 - -
      5   6   +  Internal         13050      13250        201          1 3 - -
      5   7   +  Internal         13327      13478        152          1 2 - -
      5   8   +  Terminal         13747      15049       1303          3 3 - -
    
      6   5   -  Terminal         15376      15711        336          3 1 - -
      6   4   -  Internal         16095      16133         39          3 1 - -
      6   3   -  Internal         16213      16285         73          3 3 - -
      6   2   -  Internal         16701      16780         80          2 1 - -
      6   1   -  Initial          17058      17090         33          3 1 - -
    
      7   9   -  Terminal         17552      17844        293          3 2 - -
      7   8   -  Internal         18345      18631        287          1 3 - -
      7   7   -  Internal         18876      19033        158          2 1 - -
      7   6   -  Internal         19107      19289        183          3 1 - -
      7   5   -  Internal         19477      19788        312          3 1 - -
      7   4   -  Internal         20059      20224        166          3 3 - -
      7   3   -  Internal         20291      20379         89          2 1 - -
      7   2   -  Internal         20450      20517         68          3 2 - -
      7   1   -  Initial          20763      21216        454          1 1 - -
    
      8   1   +  Initial          22747      22974        228          1 3 - -
      8   2   +  Terminal         23025      23201        177          1 3 - -
    
      9  13   -  Terminal         24193      24294        102          3 1 - -
      9  12   -  Internal         24346      24444         99          3 1 - -
      9  11   -  Internal         24507      24551         45          3 1 - -
      9  10   -  Internal         24601      24726        126          3 1 - -
      9   9   -  Internal         24783      24893        111          3 1 - -
      9   8   -  Internal         24936      25140        205          3 3 - -
      9   7   -  Internal         25194      25301        108          2 3 - -
      9   6   -  Internal         25364      25538        175          2 2 - -
      9   5   -  Internal         25593      25910        318          1 2 - -
      9   4   -  Internal         25965      26016         52          1 1 - -
      9   3   -  Internal         26233      26349        117          3 1 - -
      9   2   -  Internal         26445      26588        144          3 1 - -
      9   1   -  Initial          26653      26868        216          3 1 - -
    
     10   3   -  Terminal         27012      27210        199          3 3 - -
     10   2   -  Internal         27266      27606        341          2 1 - -
     10   1   -  Initial          27657      27725         69          3 1 - -
    
     11   1   +  Initial          27996      28286        291          1 3 - -
     11   2   +  Internal         28355      28483        129          1 3 - -
     11   3   +  Internal         28539      28595         57          1 3 - -
     11   4   +  Internal         28793      28998        206          1 2 - -
     11   5   +  Internal         29067      29418        352          3 3 - -
     11   6   +  Internal         29473      29665        193          1 1 - -
     11   7   +  Terminal         29715      29854        140          2 3 - -
    
     12   3   -  Terminal         29967      30066        100          3 3 - -
     12   2   -  Internal         30129      30275        147          2 3 - -
     12   1   -  Initial          30341      30510        170          2 1 - -
    
     13  12   -  Terminal         30987      31241        255          3 1 - -
     13  11   -  Internal         31318      31551        234          3 1 - -
     13  10   -  Internal         31595      31736        142          3 3 - -
     13   9   -  Internal         31794      31919        126          2 3 - -
     13   8   -  Internal         31976      32070         95          2 1 - -
     13   7   -  Internal         32126      32211         86          3 2 - -
     13   6   -  Internal         32275      32358         84          1 2 - -
     13   5   -  Internal         32412      32488         77          1 3 - -
     13   4   -  Internal         32529      32771        243          2 3 - -
     13   3   -  Internal         34528      34669        142          2 2 - -
     13   2   -  Internal         34890      35000        111          1 2 - -
     13   1   -  Initial          35577      35625         49          1 1 - -
    
     14  21   -  Terminal         35653      35721         69          3 1 - -
     14  20   -  Internal         35833      35931         99          3 1 - -
     14  19   -  Internal         35979      36104        126          3 1 - -
     14  18   -  Internal         36166      36247         82          3 3 - -
     14  17   -  Internal         36306      36427        122          2 1 - -
     14  16   -  Internal         36556      36785        230          3 2 - -
     14  15   -  Internal         37034      37151        118          1 1 - -
     14  14   -  Internal         37250      37369        120          3 1 - -
     14  13   -  Internal         37428      37536        109          3 3 - -
     14  12   -  Internal         37589      37647         59          2 1 - -
     14  11   -  Internal         37702      37817        116          3 2 - -
     14  10   -  Internal         37869      37977        109          1 1 - -
     14   9   -  Internal         38006      38102         97          3 3 - -
     14   8   -  Internal         38256      38350         95          2 1 - -
     14   7   -  Internal         38396      38498        103          3 3 - -
     14   6   -  Internal         38561      38655         95          2 1 - -
     14   5   -  Internal         38754      38803         50          3 2 - -
     14   4   -  Internal         38858      39018        161          1 3 - -
     14   3   -  Internal         39066      39159         94          2 2 - -
     14   2   -  Internal         39269      39385        117          1 2 - -
     14   1   -  Initial          39454      39844        391          1 1 - -
    
     15   1   +  Initial          39928      41413       1486          1 1 - -
     15   2   +  Terminal         41671      41798        128          2 3 - -
    
     16   9   -  Terminal         41874      41979        106          3 3 - -
     16   8   -  Internal         42076      42196        121          2 2 - -
     16   7   -  Internal         42341      42419         79          1 1 - -
     16   6   -  Internal         42473      42883        411          3 1 - -
     16   5   -  Internal         43145      43262        118          3 3 - -
     16   4   -  Internal         43322      43410         89          2 1 - -
     16   3   -  Internal         43463      43809        347          3 2 - -
     16   2   -  Internal         43994      44048         55          1 1 - -
     16   1   -  Initial          44096      44179         84          3 1 - -
    
     17   1   +  Initial          44375      44774        400          1 1 - -
     17   2   +  Internal         44833      44913         81          2 1 - -
     17   3   +  Internal         45007      45111        105          2 1 - -
     17   4   +  Internal         45165      45271        107          2 3 - -
     17   5   +  Internal         45326      45536        211          1 1 - -
     17   6   +  Internal         45590      45824        235          2 2 - -
     17   7   +  Internal         45877      46018        142          3 3 - -
     17   8   +  Terminal         46072      46386        315          1 3 - -
    
     18   5   -  Terminal         46648      46918        271          3 3 - -
     18   4   -  Internal         46989      47567        579          2 3 - -
     18   3   -  Internal         47960      48030         71          2 1 - -
     18   2   -  Internal         48171      48284        114          3 1 - -
     18   1   -  Initial          48402      48461         60          3 1 - -
    
     19   1   +  Initial          48490      48778        289          1 1 - -
     19   2   +  Internal         48836      48913         78          2 1 - -
     19   3   +  Internal         49007      49102         96          2 1 - -
     19   4   +  Internal         49156      49262        107          2 3 - -
     19   5   +  Internal         49313      49523        211          1 1 - -
     19   6   +  Internal         49577      49811        235          2 2 - -
     19   7   +  Internal         49864      50005        142          3 3 - -
     19   8   +  Terminal         50059      50373        315          1 3 - -
    
     20   9   -  Terminal         50937      51038        102          3 1 - -
     20   8   -  Internal         51096      51152         57          3 1 - -
     20   7   -  Internal         51233      51294         62          3 2 - -
     20   6   -  Internal         51351      51426         76          1 1 - -
     20   5   -  Internal         51482      51538         57          3 1 - -
     20   4   -  Internal         51602      51673         72          3 1 - -
     20   3   -  Internal         51734      51822         89          3 2 - -
     20   2   -  Internal         51874      51927         54          1 2 - -
     20   1   -  Initial          51978      52044         67          1 1 - -
    
     21   1   +  Initial          52333      52362         30          1 3 - -
     21   2   +  Terminal         52499      52834        336          1 3 - -
    
     22   3   -  Terminal         52939      53162        224          3 2 - -
     22   2   -  Internal         53323      53746        424          1 1 - -
     22   1   -  Initial          53846      53887         42          3 1 - -
    
     23  12   -  Terminal         54140      54551        412          3 3 - -
     23  11   -  Internal         54614      54795        182          2 1 - -
     23  10   -  Internal         54865      55047        183          3 1 - -
     23   9   -  Internal         55145      55243         99          3 1 - -
     23   8   -  Internal         55301      55417        117          3 1 - -
     23   7   -  Internal         55469      55609        141          3 1 - -
     23   6   -  Internal         55977      56346        370          3 3 - -
     23   5   -  Internal         56409      56530        122          2 1 - -
     23   4   -  Internal         56584      56708        125          3 2 - -
     23   3   -  Internal         56923      57004         82          1 1 - -
     23   2   -  Internal         57071      57135         65          3 2 - -
     23   1   -  Initial          57224      57884        661          1 1 - -
    
     24   3   -  Terminal         58645      58779        135          3 1 - -
     24   2   -  Internal         58916      58976         61          3 3 - -
     24   1   -  Initial          59044      59333        290          2 1 - -
    
     25   2   -  Terminal         59588      59722        135          3 1 - -
     25   1   -  Initial          60102      60182         81          3 1 - -
    
     26   4   -  Terminal         60260      60363        104          3 2 - -
     26   3   -  Internal         60467      60695        229          1 1 - -
     26   2   -  Internal         60752      60941        190          3 3 - -
     26   1   -  Initial          61048      61121         74          2 1 - -
    
     27   1   +  Initial          61292      61387         96          1 3 - -
     27   2   +  Internal         61637      61830        194          1 2 - -
     27   3   +  Internal         61891      62227        337          3 3 - -
     27   4   +  Terminal         62425      62460         36          1 3 - -
    
     28   1   -  Single           62575      63051        477          3 1 - -
    
     29   1   +  Initial          63156      63176         21          1 3 - -
     29   2   +  Internal         63240      63371        132          1 3 - -
     29   3   +  Internal         63431      63623        193          1 1 - -
     29   4   +  Internal         63706      63773         68          2 3 - -
     29   5   +  Internal         63836      63889         54          1 3 - -
     29   6   +  Internal         63953      64015         63          1 3 - -
     29   7   +  Internal         64098      64171         74          1 2 - -
     29   8   +  Internal         64245      64303         59          3 1 - -
     29   9   +  Internal         64370      64443         74          2 3 - -
     29  10   +  Internal         64492      64596        105          1 3 - -
     29  11   +  Terminal         64650      64853        204          1 3 - -
    
     30  12   -  Terminal         64890      64961         72          3 1 - -
     30  11   -  Internal         65009      65123        115          3 3 - -
     30  10   -  Internal         65176      65391        216          2 3 - -
     30   9   -  Internal         65464      65995        532          2 2 - -
     30   8   -  Internal         66091      66142         52          1 1 - -
     30   7   -  Internal         66199      66244         46          3 3 - -
     30   6   -  Internal         66350      66456        107          2 1 - -
     30   5   -  Internal         66506      66592         87          3 1 - -
     30   4   -  Internal         66650      66823        174          3 1 - -
     30   3   -  Internal         66877      66942         66          3 1 - -
     30   2   -  Internal         66989      67096        108          3 1 - -
     30   1   -  Initial          67276      67644        369          3 1 - -
    
     31   1   +  Initial          67716      68148        433          1 1 - -
     31   2   +  Internal         68210      70424       2215          2 2 - -
     31   3   +  Internal         70478      70572         95          3 1 - -
     31   4   +  Internal         70635      70983        349          2 2 - -
     31   5   +  Internal         71031      71232        202          3 3 - -
     31   6   +  Internal         71300      71464        165          1 3 - -
     31   7   +  Internal         71524      71790        267          1 3 - -
     31   8   +  Internal         71848      72045        198          1 3 - -
     31   9   +  Internal         72095      72343        249          1 3 - -
     31  10   +  Internal         72397      73599       1203          1 3 - -
     31  11   +  Internal         73661      73717         57          1 3 - -
     31  12   +  Internal         73968      74399        432          1 3 - -
     31  13   +  Internal         74459      74652        194          1 2 - -
     31  14   +  Internal         74738      74871        134          3 1 - -
     31  15   +  Internal         74959      75156        198          2 1 - -
     31  16   +  Internal         75221      75399        179          2 3 - -
     31  17   +  Terminal         75547      75651        105          1 3 - -
    
     32   2   -  Terminal         77239      77318         80          3 2 - -
     32   1   -  Initial          78058      78079         22          1 1 - -
    
     33   1   +  Initial          78224      79085        862          1 1 - -
     33   2   +  Internal         79195      79268         74          2 3 - -
     33   3   +  Terminal         79423      79905        483          1 3 - -
    
     34   1   -  Single           81871      84603       2733          3 1 - -
    
     35   1   +  Initial          84738      84743          6          1 3 - -
     35   2   +  Internal         84839      84925         87          1 3 - -
     35   3   +  Internal         85023      85299        277          1 1 - -
     35   4   +  Internal         85368      85489        122          2 3 - -
     35   5   +  Internal         85552      85626         75          1 3 - -
     35   6   +  Internal         85687      85854        168          1 3 - -
     35   7   +  Terminal         85946      86323        378          1 3 - -
    
     36   1   +  Initial          86674      86833        160          1 1 - -
     36   2   +  Internal         86883      87027        145          2 2 - -
     36   3   +  Internal         87344      87530        187          3 3 - -
     36   4   +  Internal         87650      87777        128          1 2 - -
     36   5   +  Internal         87851      87974        124          3 3 - -
     36   6   +  Internal         88025      88387        363          1 3 - -
     36   7   +  Internal         88489      88564         76          1 1 - -
     36   8   +  Internal         88615      88909        295          2 2 - -
     36   9   +  Internal         88956      90074       1119          3 2 - -
     36  10   +  Internal         90124      93364       3241          3 3 - -
     36  11   +  Internal         93415      93978        564          1 3 - -
     36  12   +  Internal         94031      94654        624          1 3 - -
     36  13   +  Internal         94707      95089        383          1 2 - -
     36  14   +  Internal         95637      95740        104          3 1 - -
     36  15   +  Internal         95796      95876         81          2 1 - -
     36  16   +  Internal         95929      96160        232          2 2 - -
     36  17   +  Terminal         96223      96637        415          3 3 - -
    
     37   4   -  Terminal         96735      96968        234          3 1 - -
     37   3   -  Internal         97851      97910         60          3 1 - -
     37   2   -  Internal         97966      98060         95          3 2 - -
     37   1   -  Initial          98125      98215         91          1 1 - -
    
     38   1   +  Initial          98655      99065        411          1 3 - -
     38   2   +  Internal         99113      99229        117          1 3 - -
     38   3   +  Internal         99290      99468        179          1 2 - -
     38   4   +  Internal         99518      99611         94          3 3 - -
     38   5   +  Internal         99663      99740         78          1 3 - -
     38   6   +  Internal         99788      99889        102          1 3 - -
     38   7   +  Internal         99948     100097        150          1 3 - -
     38   8   +  Internal        100203     100256         54          1 3 - -
     38   9   +  Internal        100844     100887         44          1 2 - -
     38  10   +  Internal        100930     101977       1048          3 3 - -
     38  11   +  Terminal        102434     102550        117          1 3 - -
    
     39   5   -  Terminal        102844     103205        362          3 2 - -
     39   4   -  Internal        103431     103574        144          1 2 - -
     39   3   -  Internal        103644     103752        109          1 1 - -
     39   2   -  Internal        103850     104047        198          3 1 - -
     39   1   -  Initial         107136     108065        930          3 1 - -
    
     40   1   +  Initial         108817     109012        196          1 1 - -
     40   2   +  Internal        109151     109285        135          2 1 - -
     40   3   +  Terminal        109407     109543        137          2 3 - -
    
     41   1   -  Single          109579     109887        309          3 1 - -
    
     42   1   +  Initial         110398     110411         14          1 2 - -
     42   2   +  Internal        111640     113147       1508          3 1 - -
     42   3   +  Terminal        113595     113965        371          2 3 - -
    
     43   1   -  Single          114232     116487       2256          3 1 - -
    
     44   1   +  Single          116886     118493       1608          1 3 - -
    
     45   1   +  Single          118909     119349        441          1 3 - -
    
     46   1   +  Initial         119628     120092        465          1 3 - -
     46   2   +  Internal        120158     120191         34          1 1 - -
     46   3   +  Internal        120260     120586        327          2 1 - -
     46   4   +  Internal        120652     120781        130          2 2 - -
     46   5   +  Terminal        120830     121034        205          3 3 - -
    
     47   4   -  Terminal        121698     122028        331          3 3 - -
     47   3   -  Internal        122093     122214        122          2 1 - -
     47   2   -  Internal        122408     122550        143          3 2 - -
     47   1   -  Initial         122694     122835        142          1 1 - -
    
     48   1   +  Single          123650     124087        438          1 3 - -
    
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