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Smo7 project

    Table of contents
    1. 1.

    Annotators 

    1. Sequence Statistics

    %GC= 48

    2. e-tandem

      Start     End      Score   Size  Count  Identity  Consensus
      46690   46749      32     10      6        85.0      tctctctctc
      45332   45441      28     10     11       67.3      tttttctttt
      46481   46550      24     10      7       74.3       gtgtgtgtgt

    3. Link to dottup graph

    4. Link to Isochore prediction graph

    5. Link to getorfs (EMBOSS) - This program predicted far more genes compared to ab initio programs.

    6. Link to tcode (EMBOSS)


    Annotations

    Please click on this link for detailed analysis of genes predicted by GENEMARK, FGENESH and GENSCAN



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     dotup.png
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    21.83 kB11:39, 21 Oct 2008dmukherjActions
     e-tandem.txt
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    233 bytes11:51, 21 Oct 2008sowmyaActions
     FGENESH_details.xlsx
    Detailed analysis of genes predicted by FGENESH
    210.55 kB12:19, 12 Dec 2008dmukherjActions
     FGENESH_summary.docx
    BLAST results / Visual representation of proteins predicted by FGENESH that have significant similarity to known proteins in SwissProt database
    3.33 MB11:50, 12 Dec 2008dmukherjActions
     Gene Co-ordinate comparison.xlsx
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    13.34 kB16:38, 15 Dec 2008dmukherjActions
     Gene Feature Comparison.xlsx
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    30.84 kB16:38, 15 Dec 2008dmukherjActions
     gene prediction.pdf
    FGENESH prediction - Monocot Model
    547 kB11:20, 24 Oct 2008dmukherjActions
     genemark-graphical model.pdf
    A graphical model of predicted genes by Genemark (Maize)
    444.9 kB11:44, 24 Oct 2008dmukherjActions
     Genemark-Protein.txt
    Predicted protein sequences by Genemark
    18.59 kB11:50, 24 Oct 2008dmukherjActions
     Genemark.txt
    Genemark Gene Predictions (Maize)
    11.63 kB11:42, 24 Oct 2008dmukherjActions
     GENEMARK_details.xlsx
    Detailed analysis of genes predicted by Genemark
    109.47 kB12:14, 12 Dec 2008dmukherjActions
     GENEMARK_summary.docx
    BLAST results of proteins predicted by GENEMARK that have significant similarity to known proteins in SwissProt.
    1664.26 kB11:50, 12 Dec 2008dmukherjActions
     GenScan summary genes 1-10.doc
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    3.48 MB10:40, 14 Dec 2008sowmyaActions
     GenScan summary genes 11-20.doc
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    3.22 MB10:40, 14 Dec 2008sowmyaActions
     GenScan summary genes 21-31.doc
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    3.59 MB10:41, 14 Dec 2008sowmyaActions
     GenScan.pdf
    Maize model
    6.5 kB14:03, 27 Oct 2008sowmyaActions
     GENSCAN_details.xlsx
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    22.41 kB15:56, 15 Dec 2008dmukherjActions
     GENSCANW output for sequence 12.docx
    Maize model
    62.43 kB14:00, 27 Oct 2008sowmyaActions
     getorfs.doc
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    392.37 kB13:38, 27 Oct 2008sowmyaActions
     grand summary.xlsx
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    888.02 kB16:38, 15 Dec 2008dmukherjActions
     isochore.1.png
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    5.97 kB11:46, 21 Oct 2008sowmyaActions
     tcode protein coding.doc
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    1365.74 kB13:46, 27 Oct 2008sowmyaActions
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