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Supplemental Data

    Table of contents
    1. 1. Transposons and Retroelements:

    This is where we should put extra stuff, I guess.

    Transposons and Retroelements:

    ==================================================
    file name: RM2sequpload_1288031922  
    sequences:             1
    total length:     400000 bp  (397100 bp excl N/X-runs)
    GC level:         45.53 %
    bases masked:     332617 bp ( 83.15 %)
    ==================================================
                   number of      length   percentage
                   elements*    occupied  of sequence
    --------------------------------------------------
    Retroelements          149       329315 bp   82.33 %
       SINEs:                0            0 bp    0.00 %
       Penelope              0            0 bp    0.00 %
       LINEs:               14         4888 bp    1.22 %
        CRE/SLACS            0            0 bp    0.00 %
         L2/CR1/Rex          0            0 bp    0.00 %
         R1/LOA/Jockey       0            0 bp    0.00 %
         R2/R4/NeSL          0            0 bp    0.00 %
         RTE/Bov-B           6         1100 bp    0.28 %
         L1/CIN4             8         3788 bp    0.95 %
       LTR elements:       135       324427 bp   81.11 %
         BEL/Pao             0            0 bp    0.00 %
         Ty1/Copia          53       113889 bp   28.47 %
         Gypsy/DIRS1        82       210538 bp   52.63 %
           Retroviral        0            0 bp    0.00 %
    
    DNA transposons         14         2433 bp    0.61 %
       hobo-Activator        6         1529 bp    0.38 %
       Tc1-IS630-Pogo        0            0 bp    0.00 %
       En-Spm                0            0 bp    0.00 %
       MuDR-IS905            1          199 bp    0.05 %
       PiggyBac              0            0 bp    0.00 %
       Tourist/Harbinger     1          156 bp    0.04 %
       Other (Mirage,        0            0 bp    0.00 %
        P-element, Transib)
    
    Rolling-circles          0            0 bp    0.00 %
    
    Unclassified:            0            0 bp    0.00 %
    
    Total interspersed repeats:      331748 bp   82.94 %
    
    
    Small RNA:               0            0 bp    0.00 %
    
    Satellites:              0            0 bp    0.00 %
    Simple repeats:         10          482 bp    0.12 %
    Low complexity:          9          387 bp    0.10 %
    ==================================================
    
    * most repeats fragmented by insertions or deletions
      have been counted as one element
                                                          
    
    The query species was assumed to be zea           
    RepeatMasker version open-3.2.9 , default mode
                                       
    run with blastp version 3.0SE-AB [2009-10-30] [linux26-x64-I32LPF64 2009-10-30T17:06:09]
    RepBase Update 20090604, RM database version 20090604
    
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    2.86 kB14:54, 26 Oct 2010nhoodActions
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