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Sequence 205 Supplemental Information

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    see this link for current compiled data:

    Seq205

     

    S1: Compseq Output

    Output from 'compseq'
    #
    # The Expected frequencies are calculated on the (false) assumption that every
    # word has equal frequency.
    #
    # The input sequences are:
    #	seq205
    
    
    Word size	2
    Total count	399999
    
    #
    # Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency
    #
    AA	31675		0.0791877	0.0625000	1.2670032
    AC	21718		0.0542951	0.0625000	0.8687222
    AG	25051		0.0626277	0.0625000	1.0020425
    AT	27520		0.0688002	0.0625000	1.1008028
    CA	26401		0.0660027	0.0625000	1.0560426
    CC	23759		0.0593976	0.0625000	0.9503624
    CG	17917		0.0447926	0.0625000	0.7166818
    CT	24884		0.0622102	0.0625000	0.9953625
    GA	25462		0.0636552	0.0625000	1.0184825
    GC	21945		0.0548626	0.0625000	0.8778022
    GG	23510		0.0587751	0.0625000	0.9404024
    GT	21317		0.0532926	0.0625000	0.8526821
    TA	22425		0.0560626	0.0625000	0.8970022
    TC	25542		0.0638552	0.0625000	1.0216826
    TG	25753		0.0643827	0.0625000	1.0301226
    TT	31383		0.0784577	0.0625000	1.2553231
    
    Other	3737		0.0093425	0.0000000	10000000000.0000000

     

    S2: Repeat Masker results

    repeatmasker.jpg

     

     

    S3 Image 1: 205-01 Model 1; C-score= -0.34

    205-01 model1.png

     

    S4 Image 2: 205-01 Model 2; C-score= -1.07

    205-01 model2.png

     

    S5 Image 3: 205-01 Model 3; C-score= -0.89

    205-01 model3.png

     

    S6 Image 4: 205-01 Model 4; C-score= -2.58

    205-01 model4.png

     

    S7 Image 5: 205-01 Model 5; C-score= -1.02

    205-01 model5.png

     

    S8 Image 6: 205-17 Model 1; C-Score= -3.51

    lipase model1.png

     

    S9 Image 7: 205-17 Model 2; C-Score= -4.09

    lipase model2.png

     

    S10 Image 8: 205-17 Model 3; C-score= -4.21

    lipase model3.png

     

    S11 Image 9: 205-17 Model 4; C-score= -4.22

    lipase model4.png

     

    S12 Image 10: 205-17 Model 5; C-Score= -4.27

    lipase model5.png

     

    S13 Image 11: rp3-1 Model 1; C-Score= -4.03

    rust protein model1.png

     

    S14 Image 12: rp3-1 Model 2; C-Score= -4.69

    rust protein model2.png

     

    S15 Image 13: rp3-1 Model 3; C-Score= -4.11

    rust protein model3.png

     

    S16 Image 14: rp3-01 Model 4; C-Score= -4.79

    rust protein model4.png

     

    S17 Image 15: rp3-1 Model 5= -4.80

    rust protein model5.png

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