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AGRY600 - Genomics - Fall 2010

    Instructors:  Cliff Weil, Michael Gribskov

    If you are new to wikis, I have started a help page

    News

     

    Many groups still have not found out whether there are potential genes in their sequence or what their sequence may match in the database.  You should have done this by now.

    Annotation Groups: 

    Questions & Answers (AKA FAQ)

    Please enter your questions here.  Anyone who knows an answer feel free to respond.  Did you know you can sign your text be typing four tildes (~ four times) ?  This makes something like - gribskov 07 September 2010.  I suggest you sign questions and answers.  To make it easier to see the answers, they are now in red.

    • How do i extract a short region from my sequence, e.g., the coding region of a gene?gribskov 14 Oct 2010
      I wrote a script to do this called ClipIt
    • How do I make a new page such as "Sequence 190 Annotation" as gribskov did above? gribskov 07 September 2010
      see the help page - gribskov 07 September 2010
    • How do I make a link? gribskov 07 September 2010
      This is also on the help page - gribskov 07 September 2010
    • Where can I put stuff that I'm working on where only I can see it?gribskov 07 September 2010
      Every user has a personal page; click "my page" in the black menu bar to see yours.  This page starts out public, but you can restrict access to any person or group that you like using the "restrict access" item found under "more" in the gray menu bar.gribskov 07 September 2010
    • Does anyone want to know how to make a figure in your text? gribskov 13 September 2010

    Tools

    This is not a list of programs you should blindly run, nor should you expect me to update it for you.  Please add useful programs as you find them.

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    Files 10

    FileSizeDateAttached by 
     seq190
    sequence 190
    403.67 kB16:00, 20 Sep 2010gribskovActions
     seq191
    sequence191
    403.67 kB12:08, 7 Sep 2010gribskovActions
    seq200
    sequence 200
    397.15 kB16:12, 16 Sep 2010lau3Actions
     seq201
    sequence 201
    403.67 kB12:08, 7 Sep 2010gribskovActions
     seq202
    sequence 202
    403.67 kB12:08, 7 Sep 2010gribskovActions
     seq203
    sequence 203
    403.67 kB12:08, 7 Sep 2010gribskovActions
     seq204
    sequence 204
    403.67 kB15:55, 7 Sep 2010gribskovActions
     seq205
    sequence205
    403.67 kB15:55, 7 Sep 2010gribskovActions
     seq206
    sequence 206
    403.67 kB12:08, 7 Sep 2010gribskovActions
     seq207
    sequence 207
    403.67 kB22:05, 23 Oct 2010huang147Actions
    Viewing 2 of 2 comments: view all
    The chaos game graph is an interesting approach-- what does it tell you?
    Posted 09:01, 21 Oct 2010
    Unfortunately, its never told me very much. Anyone else?
    Posted 17:05, 26 Oct 2010
    Viewing 2 of 2 comments: view all
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