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Various Sequence Features

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    We used EMBOSS explorer to identify CpG islands, open reading frames, inverted repeats, and potential coding regions in our sequence.

    -The EMBOSS explorer program "newcpgreport" identified 74 CpG islands in our sequence.

    -To read the report click here.

    -The EMBOSS explorer program "einverted" identified 54 inverted repeats in our sequence.

    -To read the report click here.

    -The EMBOSS explorer program "showorf" checked the 3 reading frames of the positive strand and the 3 reading frames of the negative strand for stop codons to identify areas of the sequence that are open reading frames.

    -To read the report click here.

    -The EMBOSS explorer program "tcode" examined the sequence to identify potential coding regions.

    -To read the report click here.

     

    We also used EMBOSS explorer to identify base and dinucleotide content in our sequence.

    -The EMBOSS explorer program "comseq"  showed that the GC content of our sequence was 45.64% (658,471 bp / 150,000 bp).

    -To read the report click here.

     

     

     

    These EMBOSS explorer programs and others can be accessed at http://pro.genomics.purdue.edu/emboss/

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