Annotators

    shorter

    Andino
     


           

           

         

           

           

           

    Sequence Interpretation

      Gene Type
      Strand   Begin   End   GeneMark   FGeneSH   Comments
      smo3_gene1   exon   +   2321   2523

      Gene3 predicts 3 exons

      combined into gene 2 with other multiple genes
    Blast Results
    Retrovirus-related Pol polyprotein from transposon
                TNT 1-94
                     exon   +   2613   2752                                             
                     exon   +   2988   3289                                             








    smo3 gene2
    exon

    -


    7667
    8350
    Gene 6 predicts 9 exons
    combined into gene 2 with other multiple genes

    Blast results prediction 2

    ubiquitin-protein ligase UBR2


    -
    8409
    8460





    -
    8520
    9157





    -
    9215
    9421





    -
    9476
    10252





    -
    10311
    10554





    -
    10619
    11952





    -
    12008
    13126





    -
    13183
    13278











    Smo3 gene 3
    exon
    +
    13417
    16062
    gene 7 predicts 1 exon
    In gene 3 predicts 4 exons with an additional sequence

    Blast results prediction 3

                  

    Protein Rf1, mitochondrial; AltName: Full=Protein
                PPR; AltName: Full=Fertility restorer








    Smo3 gene 4
    exon
    +
    16356
    16743
    gene 8 predicts 3 exons
    In gene 3 and predicts is as being combined with the previous gene

    Blast results prediction 4

                  

    Protein TWIN SISTER of FT; AltName: Full=TFL1-like
                protein



    16803
    16894






    16961
    17095











    Smo3 gene 5
    exon
    +
    18681
    19232
    gene 10 predicts 1 exon
    gene 5 predicts, but with extra and in the - direction...

    Blast results prediction 5

                  

    Full=60S ribosome subunit biogenesis protein NIP7








    Smo3 gene 6
    exon
    +
    19423
    19495
    In gene 11 and with 6 exons
    In gene 4 combined with other genes and in the - direction

    blast results prediction 6

                  

    14-3-3-like protein GF14 iota; AltName: Full=General
                regulatory factor 12.


    +
    19576
    19882





    +
    19953
    20040





    +
    20111
    20220





    +
    20296
    20444





    +
    20529
    20590











    Smo3 gene 7
    exon
    +
    22481
    23707
    Gene 13 predicts 1 exon
    In gene 6 and combined with other genes

    Blast results prediction 7

                  

    Transcription factor TCP9








    Smo3 gene 8
    exon
    +
    30191
    30613
    Gene 17 predicts 9 exons
    combined in gene 7 with other genes

    blast results prediction 8

    Alpha-amylase isozyme 3A; AltName:
      Full=1,4-alpha-D-glucan glucanohydrolase

                  




    +
    30676
    30805





    +
    30870
    31293





    +
    31363
    31451





    +
    31526
    31678





    +
    31740
    31876





    +
    31940
    32109





    +
    32163
    32506





    +
    32624
    32790











    Smo3 gene 9
    exon
    -
    36575
    36721
    In gene 23 as 5 exons
    In gene 8 combined with another gene

    Blast results prediction 9 (Possible human contaminent?)

                  

    Uncharacterized protein C22orf25


    -
    36777
    36959





    -
    37028
    37234





    -
    37310
    37499





    -
    37560
    37642











    Smo3 gene 10
    exon
    +
    46943
    47014
    In gene 26 as 2 exons
    combined in gene 9 with other genes

    blast results prediction 10

                  

    Formin-like protein 14



    47063
    47317



    Smo3 Gene 11
    exon

    +


    70673

    71123

    In gene 37 as 9 exons

    In gene 18

    Blast results prediction 11
     

    Full=Putative DEAD-box ATP-dependent RNA helicase 29 




    +

    71190

    72345






    +

    72404

    72461






    +

    72519

    72644





    + 72693 72865





    +
    73033
    73114





    +
    73167
    73223





    + 73277
    73385





    +
    73444
    73697



    Smo gene 12 exon +       +       + 74749 76614 77221 74973 77172 78122 In gene 38 as 3 exons In gene 18

    Blast results prediction 12                                                                                                                                 

    Full=Cytokinin-O-glucosyltransferase

    Smo gene 13 exon +       +       +       +       +       +       + 79870 80045 80156 80542 80842 81029 81144  79920 80102 80349 80775 80970 81090 81252 In gene 40 as 7 exons In the end of gene 18 

    Blast results prediction 13                                                

     Arabidopsis thaliana At1g73650/F25P22_7 gene, complete cds

    Smo gene 14 exon -         -         -         -         -         -         -         -         -         -         - 81379 81608 81880 82067 82250 82445 82734 82970 83151 83478 83668 81543 81814 82014 82198 82367 82674 82907 83101 83411 83558 84134 In gene 41 as 11 exons In gene 19 Blast results prediction 14                                                                              Arabidopsis thaliana long-chain-fatty-acid--CoA ligase familyproteinArabidopsis thaliana long-chain-fatty-acid--CoA ligase familyprotein                                                                             








































                  

           


           

           

    Simple Statistics

    • Sequence:smo3 gladys
    • Scaffold: 2
    • Bases: 2032000-2132000
    • Length: 100001 bases
    • GC content: 47%
    Was this page helpful?
    Tag page (Edit tags)
    • No tags

    Files 21

    FileSizeDateAttached by 
     dottup.1.png
    No description
    18.01 kB14:42, 13 Oct 2008gandinoActions
     FGENESH 2.6 Prediction of potential genes in Monocot genomic DNA.pdf
    No description
    384.39 kB16:12, 13 Oct 2008gandinoActions
     GeneMark-1.doccr
    No description
    97 kB15:02, 13 Oct 2008gandinoActions
     outfile.etandem.txt
    No description
    908 bytes15:09, 13 Oct 2008gandinoActions
     smo gene 11_7exones_37Genemark (2).tiff
    No description
    96.36 kB19:40, 8 Dec 2008gandinoActions
     smo3 gene 13-7 exones_40 genemark.tiff
    No description
    1389.55 kB19:15, 8 Dec 2008gandinoActions
     smo3 gene 14-11 exones-41 genemark.tif
    No description
    262.48 kB18:52, 8 Dec 2008gandinoActions
     smo3_1-10
    No description
    131.93 kB15:45, 8 Nov 2008shorterActions
     smo3_gene 12_3 exones_38 genemark.tif
    No description
    209.64 kB19:35, 8 Dec 2008gandinoActions
     smo3_gene1.tiff
    No description
    3.05 MB12:13, 7 Nov 2008shorterActions
     smo3_gene10.tiff
    No description
    2.73 MB15:44, 8 Nov 2008shorterActions
     smo3_gene2.tiff
    No description
    2.76 MB11:57, 8 Nov 2008shorterActions
     smo3_gene3.tiff
    No description
    2.75 MB12:44, 8 Nov 2008shorterActions
     smo3_gene4.tiff
    No description
    2.74 MB12:45, 8 Nov 2008shorterActions
     smo3_gene5.tiff
    No description
    2.74 MB12:45, 8 Nov 2008shorterActions
     smo3_gene6.tiff
    No description
    2.75 MB14:08, 8 Nov 2008shorterActions
     smo3_gene7.tiff
    No description
    2.72 MB14:11, 8 Nov 2008shorterActions
     smo3_gene8.tiff
    No description
    2.75 MB14:12, 8 Nov 2008shorterActions
     smo3_gene9.tiff
    No description
    2.74 MB15:43, 8 Nov 2008shorterActions
     smo_gene 12_3 exones_38 genemark.tif
    No description
    209.64 kB19:32, 8 Dec 2008gandinoActions
    Softberry - FGENESH result.webarchive
    No description
    83.18 kB16:10, 13 Oct 2008gandinoActions
    You must login to post a comment.