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    Note: We feel that our work on this project was equally distributed.

    Group 6 Final Presentation Powerpoint.

     

    Group 6 Content:

    1) BLASTx Results Against Different Plant Genomes

    2) Results from RepeatMasker

    3) Various Sequence Features

    4) Gene Predictions by Programs

    5) Sequence Annotated as Predicted by Programs

    6) BLASTx Analysis of Predicted Genes

    7) Most Promising Genes

    8) Final Gene Model Predictions

     

     

    Hello, I am Jorge Diaz from Botany and Plant Pathology Department. This is my first semester in the master's program and I am in Aime lab. I work with cocoa pathogen, Moniliophthora roreri, trying to understand the mating system of this species. My e-mail is: jdiazval@purdue.edu

     

    Hi, I am Bikash Shakya, a second year PULSe student at Department of Medicinal Chemistry and Molecular Pharmacology. I work on Plasmodium falciparum exported proteins at Dr. LaCount's lab.

    Bikash Shakya

     

    Hi, my name is Emma Lang and I am a second year PULSe student who is working in the Entomology Department. I am a member of Dr. Catherine Hill's lab and the focus of my research is insecticide discovery. My e-mail is lang8@purdue.edu.

     

    Emma Lang
    Jorge Diaz-Valderrama
    Bikash Shakya

    PRELIMINARY RESULT:

    FGENESH 

    Number of predicted genes 28: 

    Number of predicted exons 80

     

    GeneMark.hmm 
    Number of predicted genes 27 
    Number of predicted exons 104

    Bikash Shakya

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     27 Genes BLAST Table.xlsx
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    13.05 kB22:23, 15 Oct 2012lang8Actions
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    12.03 kB17:21, 22 Oct 2012lang8Actions
     blastx with Hordeum spp.pdf
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     FGENESH Seq- Results.pdf
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     FGENESH with Monocot.pdf
    Seq6 Vs monocot FGENESH
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     Group 6 Final Genomics Presentation Powerpoint.pptx
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     Mobile elements and others in Seq 6 with Arabidopsis thaliana.docx
    Mobile elements after blastx with Arabodopsis thaliana
    133.62 kB11:44, 15 Oct 2012jdiazvalActions
     Mobile elements and others in Seq 6 with Sorghum.docx
    Mobile elements after blastx with Sorghum spp
    40.99 kB11:42, 15 Oct 2012jdiazvalActions
     Mobile elements and others in Seq 6 with Triticum aestivum.docx
    Mobile elements after blastx with Triticum aestivum
    53.42 kB11:42, 15 Oct 2012jdiazvalActions
     Mobile elements in Seq 6 with Oryzae.docx
    Mobile elements after blastx with Oryzae sativa
    184.95 kB11:42, 15 Oct 2012jdiazvalActions
     protein seq for 27 genes from GeneMark.docx
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    Seq 6 with Arabidopsis thaliana.png
    Blastx Seq6 vs Arabidopsis thaliana
    18.41 kB11:38, 15 Oct 2012jdiazvalActions
    Seq 6 with Oryzae sativa.png
    Blastx Seq6 vs Oryzae sativa
    17.7 kB11:37, 15 Oct 2012jdiazvalActions
    Seq 6 with Sorghum sp..png
    Blastx Seq6 vs Sorghum spp
    19.59 kB11:37, 15 Oct 2012jdiazvalActions
    Seq 6 with Triticum aestivum.png
    Blastx Seq6 vs Triticum aestivum
    14.92 kB11:37, 15 Oct 2012jdiazvalActions
     Seq6 vs Hordeum spp.png
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    11.58 kB13:01, 13 Oct 2012bshakyaActions
     seq6 vs Secale spp..png
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    152.36 kB16:50, 17 Sep 2012gribskovActions
     Working Table.xlsx
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    77.5 kB11:16, 16 Oct 2012lang8Actions
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    FGENESH
    Number of predicted genes 28:
    Number of predicted exons 80:
    Posted 19:58, 1 Oct 2012
    GeneMark.hmm
    Number of predicted genes 27
    Number of predicted exons 104
    Posted 20:04, 1 Oct 2012
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